- D. melanogaster
- C. elegans
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Histone Variants
Genome-wide Chromatin Profiling in Drosophila
Pi: Steven HenikoffLabs: Kamran AhmadSubmissions: 7Experimental factors: biochemical fraction, cell line, extraction time, sodium chloride concentrationGBrowse Tracks: 2 -
Histone Variants
Genome-wide Chromatin Profiling
Pi: Steven HenikoffLabs: Kamran Ahmad, Steven HenikoffSubmissions: 32Experimental factors: developmental stage, biochemical fraction, cell line, extraction time, sodium chloride concentrationGBrowse Tracks: 32
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- Jason Lieb
- Steven Henikoff
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Chromatin Function
Nucleosome mapping
Pi: Jason LiebLabs: Jason LiebSubmissions: 3Experimental factors: developmental stage, strain, temperatureGBrowse Tracks: 3 -
Histone Variants
Genome wide chromatin profiling in C. elegans
Pi: Steven HenikoffLabs: Steven HenikoffSubmissions: 8Experimental factors: developmental stage, biochemical fraction, extraction time, sodium chloride concentration, strainGBrowse Tracks: 8
- D. melanogaster
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Origins of Replication
CGH drosophila cell lines
Pi: David MacAlpineLabs: David MacAlpineSubmissions: 1Experimental factors: cell lineGBrowse Tracks: 1 -
Origins of Replication
CNV in Drosophila cell lines
Pi: David MacAlpineLabs: David MacAlpineSubmissions: 7Experimental factors: cell lineGBrowse Tracks: 7 -
Origins of Replication
Differential Replication of Polytene Chromosomes
Pi: David MacAlpineLabs: Terry Orr-WeaverSubmissions: 7Experimental factors: developmental stage, strain, tissueFeatures: CopyNumberVariation: 149GBrowse Tracks: 7
- D. melanogaster
- C. elegans
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The Drosophila Transcriptome
RT-PCR
Pi: Sue CelnikerLabs: Michael BrentSubmissions: 5Experimental factors: cell lineGBrowse Tracks: 9 -
The Drosophila Transcriptome
Analysis of TSS using stranded RACE products
Pi: Sue CelnikerLabs: Sue CelnikerSubmissions: 1Experimental factors: developmental stage, strainGBrowse Tracks: 1 -
The Drosophila Transcriptome
Annotation of the developmental transcriptome of Drosophila melanogaster
Pi: Sue CelnikerLabs: Brian Oliver, Sue CelnikerSubmissions: 2Features: SnoRNA: 39, CDNAMatch: 1457, Exon: 251915, Gene: 16857, MRNA: 39418, Transcript: 4160, StopCodon: 39433, FivePrimeUTR: 60196, StartCodon: 39559, ThreePrimeUTR: 37615GBrowse Tracks: 3 -
The Drosophila Transcriptome
Validation of Drosophila transcripts by full-length cDNA screening and sequencing
Pi: Sue CelnikerLabs: Sue CelnikerSubmissions: 6Experimental factors: developmental stage, cDNA library, strainFeatures: CDNAMatch: 8839GBrowse Tracks: 6 -
The Drosophila Transcriptome
Cap Analysis of Gene Expression
Pi: Sue CelnikerLabs: Sue CelnikerSubmissions: 43Experimental factors: developmental stage, cell line, strain, tissueGBrowse Tracks: 40 -
The Drosophila Transcriptome
5' RACE
Pi: Sue CelnikerLabs: Sue CelnikerSubmissions: 8Experimental factors: developmental stage, strainGBrowse Tracks: 2 -
The Drosophila Transcriptome
Annotation of Drosophila splice junctions by RNA-seq
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The Drosophila Transcriptome
Drosophila Cell Line and Developmental Stage Gene and Exon Scores
Pi: Sue CelnikerLabs: Peter CherbasSubmissions: 1Experimental factors: developmental stage, cell line, strain
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- Fabio Piano
- Robert Waterston
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The 3' UTRome
Encyclopedia of C. elegans 3'UTRs and their regulatory elements
Pi: Fabio PianoLabs: Fabio Piano, John KimSubmissions: 41Experimental factors: developmental stage, strain, temperature, tissueFeatures: Exon: 21355, Gene: 20220, MRNA: 3720, PolyASignalSequence: 27135, Transcript: 27417, ThreePrimeRACEClone: 2700, PolyASite: 35382, EST: 2694, ThreePrimeRST: 2700, ThreePrimeUST: 2700, ThreePrimeUTR: 24055GBrowse Tracks: 60 -
The C. elegans Transcriptome
SL Acceptor Site Confirmation in C. elegans
Pi: Robert WaterstonLabs: Phil GreenSubmissions: 2Experimental factors: developmental stage, strainFeatures: Primer: 2, SL7AcceptorSite: 1, SL1AcceptorSite: 987, TranscriptRegion: 1533, EST: 1483, SL2AcceptorSite: 46, SL4AcceptorSite: 1, SplicedLeaderRNA: 13GBrowse Tracks: 7 -
The C. elegans Transcriptome
Intron Confirmation in C. elegans
Pi: Robert WaterstonLabs: Phil GreenSubmissions: 6Experimental factors: developmental stage, strainGBrowse Tracks: 24 -
The C. elegans Transcriptome
Mass spectrometric validation of short ORFs
Pi: Robert WaterstonLabs: Michael MacCossSubmissions: 1Experimental factors: developmental stage, strain, temperatureGBrowse Tracks: 1 -
The C. elegans Transcriptome
Genelet Gap Closing
Pi: Robert WaterstonLabs: Phil GreenSubmissions: 1Experimental factors: developmental stage, strainGBrowse Tracks: 4 -
The C. elegans Transcriptome
Identification of small RNAs in C. elegans
Pi: Robert WaterstonLabs: Frank SlackSubmissions: 23Experimental factors: developmental stage, days post-L4, strain, temperatureFeatures: MiRNA: 8464GBrowse Tracks: 23 -
The C. elegans Transcriptome
Transcription Start Site Confirmation in C. elegans
Pi: Robert WaterstonLabs: Phil GreenSubmissions: 1Experimental factors: developmental stage, strainGBrowse Tracks: 2
- D. melanogaster
-
The Drosophila Transcriptome
Genomic Assembly of D. melanogaster strains and cell lines
Pi: Sue CelnikerLabs: Brenton GraveleySubmissions: 17Experimental factors: developmental stage, cell line, strainGBrowse Tracks: 17 -
The Drosophila Transcriptome
Genomic Sequencing of D. melanogaster strains and cell lines
Pi: Sue CelnikerLabs: Brenton GraveleySubmissions: 17Experimental factors: developmental stage, cell line, strain
- D. melanogaster
- C. elegans
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- Gary Karpen
- Kevin White
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Chromosomal Proteins
Genomic Distributions of Histone Modifications in D. melanogaster by ChIP-seq
Pi: Gary KarpenLabs: Gary Karpen, Mitzi Kuroda, Sarah ElginSubmissions: 78Experimental factors: developmental stage, antibody, cell line, strain, tissueGBrowse Tracks: 78 -
Chromosomal Proteins
HMM Prediction of D. melanogaster Chromatin States
Pi: Gary KarpenLabs: Gary KarpenSubmissions: 4Experimental factors: cell lineFeatures: ChromatinState: 189618GBrowse Tracks: 4 -
Chromosomal Proteins
Genomic Distributions of Histone Modifications
Pi: Gary KarpenLabs: Gary Karpen, Mitzi Kuroda, Sarah Elgin, Vincent PirrottaSubmissions: 269Experimental factors: developmental stage, antibody, cell line, strain, tissueGBrowse Tracks: 451 -
Chromosomal Proteins
RNAi of Histone Proteins in D. melanogaster
Pi: Gary KarpenLabs: Gary KarpenSubmissions: 2Experimental factors: antibody, RNAi reagent, cell lineFeatures: BindingSite: 29089GBrowse Tracks: 2 -
Regulatory Elements in Drosophila
Chromatin Binding Site Mapping of Modified Histone Proteins in D. melanogaster by ChIP-seq
Pi: Kevin WhiteLabs: Kevin WhiteSubmissions: 6Experimental factors: developmental stage, antibody, cell line, strain -
Regulatory Elements in Drosophila
Chromatin Binding Site Mapping of Modified Histone Proteins in D. melanogaster
Pi: Kevin WhiteLabs: Kevin WhiteSubmissions: 6Experimental factors: developmental stage, antibody, strainFeatures: ProteinBindingSite: 15926GBrowse Tracks: 6
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Chromatin Function
Chromatin ChIP-seq of Modified Histones in C. elegans
Pi: Jason LiebLabs: Abby Dernburg, Jason Lieb, Julie Ahringer, Susan StromeSubmissions: 65Experimental factors: developmental stage, antibody, strain, temperatureGBrowse Tracks: 60 -
Chromatin Function
Chromatin ChIP-chip of Modified Histones in C. elegans
Pi: Jason LiebLabs: Jason Lieb, Julie Ahringer, Susan StromeSubmissions: 12Experimental factors: developmental stage, antibody, strain, temperatureFeatures: BindingSite: 57588GBrowse Tracks: 10 -
Chromatin Function
Chromatin ChIP-seq
Pi: Jason LiebLabs: Jason Lieb, Julie Ahringer, Susan StromeSubmissions: 23Experimental factors: developmental stage, antibody, strain, temperatureFeatures: BindingSite: 190586GBrowse Tracks: 27
- D. melanogaster
- C. elegans
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- Kevin White
- Sue Celniker
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Regulatory Elements in Drosophila
Systematic evaluation of factors influencing ChIP-seq fidelity using ultra-deep sequencing
Pi: Kevin WhiteLabs: Kevin WhiteSubmissions: 2Experimental factors: antibody, cell line -
The Drosophila Transcriptome
RNA made in Bloomington
Pi: Sue CelnikerLabs: Peter Cherbas, Tom GingerasSubmissions: 17Experimental factors: developmental stage, cell line, compartment, compound, strain, tissueGBrowse Tracks: 40
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- Fabio Piano
- Robert Waterston
-
The 3' UTRome
Encyclopedia of C. elegans 3'UTRs and their regulatory elements - samples
Pi: Fabio PianoLabs: Fabio PianoSubmissions: 1Experimental factors: developmental stage, strain, temperature -
The C. elegans Transcriptome
Validation of C. elegans miRNAs by qRT-PCR
Pi: Robert WaterstonLabs: Frank SlackSubmissions: 1Experimental factors: developmental stage, strain, temperature
- D. melanogaster
- C. elegans
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- Gary Karpen
- Kevin White
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Chromosomal Proteins
Genomic Distributions of non-Histone Chromosomal Proteins in D. melanogaster by ChIP-seq
Pi: Gary KarpenLabs: Gary Karpen, Mitzi Kuroda, Sarah ElginSubmissions: 57Experimental factors: developmental stage, antibody, cell line, strain, tissueGBrowse Tracks: 57 -
Chromosomal Proteins
Digital DNase I-seq to map regions of Chromatin Accessibility in D. melanogaster
Pi: Gary KarpenLabs: Gary KarpenSubmissions: 3Experimental factors: cell line -
Chromosomal Proteins
RNAi of non-Histone Chromosomal Proteins in D. melanogaster
Pi: Gary KarpenLabs: Sarah Elgin, Vincent PirrottaSubmissions: 33Experimental factors: antibody, RNAi reagent, cell lineGBrowse Tracks: 33 -
Chromosomal Proteins
Genomic Distributions of non-Histone Chromosomal Proteins in D. melanogaster
Pi: Gary KarpenLabs: Gary Karpen, Mitzi Kuroda, Sarah Elgin, Vincent PirrottaSubmissions: 162Experimental factors: developmental stage, antibody, cell line, strain, tissueGBrowse Tracks: 270 -
Regulatory Elements in Drosophila
Classification of D. melanogaster Insulator Binding Sequences
Pi: Kevin WhiteLabs: Kevin WhiteSubmissions: 1Features: InsulatorBindingSite: 7685GBrowse Tracks: 1 -
Regulatory Elements in Drosophila
Chromatin Binding Site Mapping of non-Histone Chromosomal Proteins in D. melanogaster
Pi: Kevin WhiteLabs: Kevin WhiteSubmissions: 13Experimental factors: developmental stage, antibody, strainFeatures: ProteinBindingSite: 94040GBrowse Tracks: 13 -
Regulatory Elements in Drosophila
Chromatin Binding Site Mapping of non-Histone Chromosomal Proteins in D. melanogaster by ChIP-seq
Pi: Kevin WhiteLabs: Kevin WhiteSubmissions: 6Experimental factors: developmental stage, antibody, cell line, strainFeatures: BindingSite: 39634
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Chromatin Function
Chromatin ChIP-seq of non-Histone Chromosomal Proteins in C. elegans
Pi: Jason LiebLabs: Abby Dernburg, Arshad Desai, Jason Lieb, Julie Ahringer, Susan StromeSubmissions: 75Experimental factors: developmental stage, antibody, strain, temperatureFeatures: BindingSite: 1090972GBrowse Tracks: 69 -
Chromatin Function
Chromatin ChIP-chip
Pi: Jason LiebLabs: Arshad Desai, Jason Lieb, Julie Ahringer, Susan StromeSubmissions: 113Experimental factors: developmental stage, antibody, strain, temperatureGBrowse Tracks: 114 -
Chromatin Function
Chromatin ChIP-chip of non-Histone Chromosomal Proteins in C. elegans
Pi: Jason LiebLabs: Jason LiebSubmissions: 7Experimental factors: developmental stage, antibody, strain, temperatureFeatures: BindingSite: 25280GBrowse Tracks: 7
- D. melanogaster
- C. elegans
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- Brian Oliver
- Steven Henikoff
- Kevin White
- Eric Lai
- Sue Celniker
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Comparative Genomics
Transcriptional Profiling of additional Drosophila species with RNA-Seq
Pi: Brian OliverLabs: Brian OliverSubmissions: 27Experimental factors: developmental stage, strain, tissueGBrowse Tracks: 4 -
Histone Variants
Transcriptional profiling of Drosophila cell lines
Pi: Steven HenikoffLabs: Kamran AhmadSubmissions: 3Experimental factors: RNAi reagent, cell lineGBrowse Tracks: 3 -
Regulatory Elements in Drosophila
RNA-seq support of the ChIP data
Pi: Kevin WhiteLabs: Kevin WhiteSubmissions: 12Experimental factors: developmental stage, strainGBrowse Tracks: 12 -
Small and microRNAs
Small RNA identification
Pi: Eric LaiLabs: Eric Lai, Gregory HannonSubmissions: 71Experimental factors: developmental stage, cell line, strain, tissueGBrowse Tracks: 142 -
The Drosophila Transcriptome
Tissue-specific Transcriptional Profiling of D. melanogaster using Roche 454 RNA-Seq
Pi: Sue CelnikerLabs: Brenton GraveleySubmissions: 2Experimental factors: developmental stage, strain, tissue -
The Drosophila Transcriptome
Developmental Time Course Transcriptional Profiling of D. melanogaster Embryo Using SOLiD Stranded Total RNA-Seq TopHat analysis
Pi: Sue CelnikerLabs: Sue CelnikerSubmissions: 12Experimental factors: developmental stage, strainGBrowse Tracks: 12 -
The Drosophila Transcriptome
Transcriptional Profiling of D. melanogaster cell lines using Illumina poly(A)+ RNA-Seq TopHat analysis
Pi: Sue CelnikerLabs: Brenton Graveley, Sue CelnikerSubmissions: 22Experimental factors: cell lineGBrowse Tracks: 22 -
The Drosophila Transcriptome
Transcriptional Profiling of D. melanogaster cell lines using Illumina poly(A)+ RNA-Seq
Pi: Sue CelnikerLabs: Brenton Graveley, Sue CelnikerSubmissions: 30Experimental factors: cell lineGBrowse Tracks: 6 -
The Drosophila Transcriptome
Tissue-specific Transcriptional Profiling of D. melanogaster using Illumina poly(A)+ RNA-Seq SPA+Bowtie analysis
Pi: Sue CelnikerLabs: Brenton GraveleySubmissions: 29Experimental factors: developmental stage, strain, tissueGBrowse Tracks: 29 -
The Drosophila Transcriptome
Tissue-specific Transcriptional Profiling of D. melanogaster using Illumina poly(A)+ RNA-Seq
Pi: Sue CelnikerLabs: Brenton GraveleySubmissions: 31Experimental factors: developmental stage, strain, tissueGBrowse Tracks: 2 -
The Drosophila Transcriptome
Unstranded Cell Line Transcriptional Profiling Using Illumina poly(A)+ RNA-seq
Pi: Sue CelnikerLabs: Brenton GraveleySubmissions: 4Experimental factors: cell line -
The Drosophila Transcriptome
Capped and uncapped short RNAs
Pi: Sue CelnikerLabs: Tom GingerasSubmissions: 8Experimental factors: cell lineGBrowse Tracks: 8 -
The Drosophila Transcriptome
Developmental Time Course Transcriptional Profiling of D. melanogaster Using Illumina poly(A)+ RNA-Seq
Pi: Sue CelnikerLabs: Brenton GraveleySubmissions: 30Experimental factors: developmental stage, strain -
The Drosophila Transcriptome
Identification of protein-RNA interactions in Drosophila using RIP-Seq TopHat analysis
Pi: Sue CelnikerLabs: Brenton GraveleySubmissions: 30Experimental factors: cell lineGBrowse Tracks: 30 -
The Drosophila Transcriptome
C-tailed RNA-Seq of Drosophila Cell lines and stages
Pi: Sue CelnikerLabs: Tom GingerasSubmissions: 6Experimental factors: developmental stage, cell line, strainGBrowse Tracks: 6 -
The Drosophila Transcriptome
Developmental Stage Timecourse Transcriptional Profiling with RNA-Seq
Pi: Sue CelnikerLabs: Sue CelnikerSubmissions: 1Experimental factors: developmental stage, strainGBrowse Tracks: 1 -
The Drosophila Transcriptome
Transcriptional Profiling of Compound-based treatments of D. melanogaster using Illumina poly(A)+ RNA-Seq TopHat alignments
Pi: Sue CelnikerLabs: Sue CelnikerSubmissions: 21Experimental factors: developmental stage, compound, strainGBrowse Tracks: 21 -
The Drosophila Transcriptome
Transcriptional Profiling of Compound-based treatments of D. melanogaster using Illumina poly(A)+ RNA-Seq SPA+Bowtie analysis
Pi: Sue CelnikerLabs: Brenton GraveleySubmissions: 21Experimental factors: developmental stage, compound, strainGBrowse Tracks: 21 -
The Drosophila Transcriptome
Short read sequencing of fly mRNA
Pi: Sue CelnikerLabs: Michael BrentSubmissions: 1Experimental factors: developmental stage, strainGBrowse Tracks: 1 -
The Drosophila Transcriptome
Developmental Time Course Transcriptional Profiling of D. melanogaster Embryo Using SOLiD Stranded Total RNA-Seq
Pi: Sue CelnikerLabs: Sue CelnikerSubmissions: 24Experimental factors: developmental stage, strainGBrowse Tracks: 12 -
The Drosophila Transcriptome
Developmental Time Course Transcriptional Profiling of D. melanogaster Using Illumina poly(A)+ RNA-Seq TopHat analysis
Pi: Sue CelnikerLabs: Sue CelnikerSubmissions: 30Experimental factors: developmental stage, strainGBrowse Tracks: 30 -
The Drosophila Transcriptome
Tissue-specific Poly(A) Site Profiling of D. melanogaster using Illumina poly(A)+ RNA-Seq SPA+Bowtie analysis
Pi: Sue CelnikerLabs: Brenton GraveleySubmissions: 29Experimental factors: developmental stage, strain, tissueGBrowse Tracks: 29 -
The Drosophila Transcriptome
Transcriptional Profiling of Compound-based treatments of D. melanogaster using Illumina poly(A)+ RNA-Seq
Pi: Sue CelnikerLabs: Brenton GraveleySubmissions: 21Experimental factors: developmental stage, compound, strain -
The Drosophila Transcriptome
Developmental Time Course Transcriptional Profiling of D. melanogaster Using Illumina poly(A)+ RNA-Seq SPA+Bowtie analysis
Pi: Sue CelnikerLabs: Brenton GraveleySubmissions: 30Experimental factors: developmental stage, strainGBrowse Tracks: 30 -
The Drosophila Transcriptome
Identification of transcribed sequences with expression profile maps
Pi: Sue CelnikerLabs: Tom GingerasSubmissions: 80Experimental factors: developmental stage, cell line, strainFeatures: TranscriptRegion: 3665935GBrowse Tracks: 80 -
The Drosophila Transcriptome
Tissue-specific Poly(A) Site Profiling of D. melanogaster using Illumina poly(A)+ RNA-Seq
Pi: Sue CelnikerLabs: Brenton GraveleySubmissions: 29Experimental factors: developmental stage, strain, tissue -
The Drosophila Transcriptome
Developmental Time Course Transcriptional Profiling of D. melanogaster Using Roche 454 RNA-Seq
Pi: Sue CelnikerLabs: Brenton Graveley, Sue CelnikerSubmissions: 10Experimental factors: developmental stage, strainGBrowse Tracks: 6 -
The Drosophila Transcriptome
Transcriptional Profiling of D. melanogaster cell lines using Illumina poly(A)+ RNA-Seq SPA Bowtie analysis
Pi: Sue CelnikerLabs: Brenton GraveleySubmissions: 28Experimental factors: cell lineGBrowse Tracks: 28 -
The Drosophila Transcriptome
D melanogaster Small RNAs
Pi: Sue CelnikerLabs: Tom GingerasSubmissions: 30Experimental factors: cell line, compartmentGBrowse Tracks: 30 -
The Drosophila Transcriptome
Identification of protein-RNA interactions in Drosophila using RIP-Seq
Pi: Sue CelnikerLabs: Brenton GraveleySubmissions: 30Experimental factors: cell line -
The Drosophila Transcriptome
Tissue-specific Transcriptional Profiling of D. melanogaster using Illumina poly(A)+ RNA-Seq multiply TopHat analysis
Pi: Sue CelnikerLabs: Sue CelnikerSubmissions: 29Experimental factors: developmental stage, strain, tissueGBrowse Tracks: 29 -
The Drosophila Transcriptome
D. melanogaster Small RNAs
Pi: Sue CelnikerLabs: Tom GingerasSubmissions: 30Experimental factors: cell line, compartment -
The Drosophila Transcriptome
RNAi of RNA splicing factors in D. melanogaster
Pi: Sue CelnikerLabs: Brenton GraveleySubmissions: 60Experimental factors: RNAi reagent, cell lineGBrowse Tracks: 60
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- Jason Lieb
- Steven Henikoff
- Fabio Piano
- Robert Waterston
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Chromatin Function
Assaying RNA Expression in C. elegans
Pi: Jason LiebLabs: Jason LiebSubmissions: 1Experimental factors: developmental stage, strain, temperatureGBrowse Tracks: 1 -
Histone Variants
Transcriptional profiling of C. elegans N2 embryos
Pi: Steven HenikoffLabs: Kamran AhmadSubmissions: 1Experimental factors: developmental stage, strainGBrowse Tracks: 1 -
The 3' UTRome
Assembly and spatio-temporal analysis of the C. elegans 3' UTRome in germline-derived cell types and somatic tissues
Pi: Fabio PianoLabs: Fabio PianoSubmissions: 4Experimental factors: developmental stage, strain, temperature, tissue -
The 3' UTRome
Encyclopedia of C. elegans 3%27UTRs and their regulatory elements - Illumina sequencing of RACE pools
Pi: Fabio PianoLabs: Fabio PianoSubmissions: 1Experimental factors: developmental stage, strain, temperature -
The 3' UTRome
Small RNA expression in C. elegans embryos
Pi: Fabio PianoLabs: Nikolaus RajewskySubmissions: 6Experimental factors: developmental stage, fixation state, fixative, strain, temperature -
The C. elegans Transcriptome
Changes in expression of small RNAs under stress conditions in C. elegans
Pi: Robert WaterstonLabs: Frank SlackSubmissions: 12Experimental factors: developmental stage, strain, temperatureGBrowse Tracks: 12 -
The C. elegans Transcriptome
Identification of transcribed sequences under pathogenic bacterial growth conditions with expression profile maps
Pi: Robert WaterstonLabs: Valerie ReinkeSubmissions: 6Experimental factors: developmental stage, exposure time, food, strainFeatures: TranscriptRegion: 261696GBrowse Tracks: 12 -
The C. elegans Transcriptome
Definition of comprehensive set of C. brenneri transcripts and expression for various stages and conditions
Pi: Robert WaterstonLabs: Robert WaterstonSubmissions: 7Experimental factors: developmental stage, strain, temperatureGBrowse Tracks: 15 -
The C. elegans Transcriptome
Changes in expression of small RNAs during aging in C. elegans
Pi: Robert WaterstonLabs: Frank SlackSubmissions: 4Experimental factors: developmental stage, days post-L4, strain, temperatureGBrowse Tracks: 8 -
The C. elegans Transcriptome
Definition of comprehensive set of C. remanei transcripts and expression for various stages and conditions
Pi: Robert WaterstonLabs: Robert WaterstonSubmissions: 10Experimental factors: developmental stage, strain, temperatureGBrowse Tracks: 20 -
The C. elegans Transcriptome
Definition of comprehensive set of C. japonica transcripts and expression for various stages and conditions
Pi: Robert WaterstonLabs: Robert WaterstonSubmissions: 9Experimental factors: developmental stage, strain, temperatureGBrowse Tracks: 11 -
The C. elegans Transcriptome
Transcriptional profiling of C. elegans Developmental Stages using RNA-seq
Pi: Robert WaterstonLabs: Robert WaterstonSubmissions: 27Experimental factors: developmental stage, strain, temperature -
The C. elegans Transcriptome
Identification of tissue and stage-specific transcribed sequences with expression profile maps
Pi: Robert WaterstonLabs: David Miller, Valerie ReinkeSubmissions: 47Experimental factors: developmental stage, antibody, strain, temperature, tissueFeatures: TranscriptRegion: 1907147GBrowse Tracks: 94 -
The C. elegans Transcriptome
Changes in expression of small RNAs during development in C. elegans
Pi: Robert WaterstonLabs: Frank SlackSubmissions: 7Experimental factors: developmental stage, strainGBrowse Tracks: 14 -
The C. elegans Transcriptome
C. elegans Developmental Stage Gene and Exon Scores
Pi: Robert WaterstonLabs: Robert WaterstonSubmissions: 1 -
The C. elegans Transcriptome
Definition of comprehensive set of C. elegans transcripts and expression for various stages and conditions
Pi: Robert WaterstonLabs: Robert WaterstonSubmissions: 113Experimental factors: developmental stage, strain, temperatureFeatures: TSS: 124709, Exon: 1936598, OverlappingESTSet: 414417, SL1AcceptorSite: 116460, Transcript: 697746, Chromosome: 6, MatureTranscript: 12316, PolyASite: 209185, Intron: 1201171, TranscriptionEndSite: 109712, SL2AcceptorSite: 33248GBrowse Tracks: 330 -
The C. elegans Transcriptome
Transcriptional profiling of C. elegans Embryonic Development using RNA-seq
Pi: Robert WaterstonLabs: Robert WaterstonSubmissions: 25Experimental factors: developmental stage, strain, temperatureGBrowse Tracks: 24 -
The C. elegans Transcriptome
Definition of comprehensive set of C. briggsae transcripts and expression for various stages and conditions
Pi: Robert WaterstonLabs: Robert WaterstonSubmissions: 15Experimental factors: developmental stage, strain, temperatureGBrowse Tracks: 28
- D. melanogaster
-
Origins of Replication
MacAlpine Early Origin of Replication Identification
Pi: David MacAlpineLabs: David MacAlpineSubmissions: 3Experimental factors: cell lineFeatures: OriginOfReplication: 1520GBrowse Tracks: 3 -
Origins of Replication
Replication Timing Characterization Repliseq
Pi: David MacAlpineLabs: David MacAlpineSubmissions: 4Experimental factors: cell line, read lengthGBrowse Tracks: 15 -
Origins of Replication
Replication Timing Characterization
Pi: David MacAlpineLabs: David MacAlpineSubmissions: 3Experimental factors: cell lineGBrowse Tracks: 3 -
Origins of Replication
Genome-wide localization of essential replication initiators
Pi: David MacAlpineLabs: David MacAlpine, Terry Orr-WeaverSubmissions: 14Experimental factors: developmental stage, antibody, cell line, read length, strain, tissueFeatures: ProteinBindingSite: 244702GBrowse Tracks: 7 -
Origins of Replication
Genome-wide localization of essential replication initiators by ChIP-chip
Pi: David MacAlpineLabs: David MacAlpine, Terry Orr-WeaverSubmissions: 6Experimental factors: developmental stage, antibody, strain, tissueGBrowse Tracks: 6
- D. melanogaster
- C. elegans
-
Regulatory Elements in Drosophila
Chromatin Binding Site Mapping of Transcription Factors in D. melanogaster by ChIP-seq
Pi: Kevin WhiteLabs: Kevin WhiteSubmissions: 72Experimental factors: developmental stage, antibody, cell line, strain, target geneGBrowse Tracks: 23 -
Regulatory Elements in Drosophila
Chromatin Binding Site Mapping
Pi: Kevin WhiteLabs: Kevin WhiteSubmissions: 271Experimental factors: developmental stage, antibody, cell line, strain, thresholdFeatures: BindingSite: 10456, ProteinBindingSite: 924713, HistoneBindingSite: 12968, TFBindingSite: 31284GBrowse Tracks: 257
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Regulatory Elements in C. elegans
ChIP-Seq Identification of C. elegans TF Binding Sites
Pi: Michael SnyderLabs: Gerstein, Michael SnyderSubmissions: 242Experimental factors: developmental stage, strain, target gene, temperatureGBrowse Tracks: 302
- C. elegans
-
The C. elegans Transcriptome
Reanalysis of comprehensive set of C. elegans transcripts and expression for various stages and conditions
Pi: Robert WaterstonLabs: Robert WaterstonSubmissions: 19Experimental factors: developmental stage, strainFeatures: TSS: 97556, Exon: 1949013, OverlappingESTSet: 160694, SL1AcceptorSite: 152720, Transcript: 653075, Intron: 1393290, PolyASite: 136181, TranscriptionEndSite: 63138, SL2AcceptorSite: 44908GBrowse Tracks: 95